# Oxford Nanopore

## From Instrument to Insights

Supercharge your science by running best practices bioinformatics workflows on Oxford Nanopore data.

## Featured Workflows

### Drug Resistance Marker Detection

[Oxford Nanopore](/content/workflows/oxford-nanopore/index.html)

Generate a report summarizing drug resistance markers detected in a given set of variant calls.

annotationdrug-resistancelong-readvariants

[Run](https://workbench.omics.ai/workflows/broadinstitute:long-read-pipelines--ONTPfTypeDrugResistanceMarkers/)

### Sentieon Long Read Germline Whole Genome Sequencing Analysis

[Oxford Nanopore](/content/workflows/oxford-nanopore/index.html)[PacBio](/content/workflows/pacbio/index.html)

Perform alignment and variant calling for SNPs, small indels, and structural variants using Sentieon.

alignmentfastqlong-readsentieonvariantswgs

[Run](https://workbench.omics.ai/workflows/DNAstack:sentieon-amazon-omics--sentieon-longread/)

### Whole Genome Variant Calling

[Oxford Nanopore](/content/workflows/oxford-nanopore/index.html)

Call small and structural variants using Oxford Nanopore data.

alignmentlong-readmtDNAstructural variantsvariants

[Run](https://workbench.omics.ai/workflows/broadinstitute:long-read-pipelines--ONTWholeGenome/)